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mega4 program  (Biodesign International Inc)

 
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    Biodesign International Inc mega4 program
    Patterns of nucleotide substitution: MDL-ERVs in cluster-B versus 157 MDL-ERVs of ~8–9 Kb in size Transition and transversion rates in the MDL-ERV proviral sequences were measured using <t> MEGA4. </t> Numbers in bold indicate transitional substitutions. Ts (transition), Tv (transversion), k (transition/transversion rate ratio). R represents overall transition/transversion bias, with A representing the number of adenosines, G the number of guanosines, T the number of thymidines, and C the number of cytidines. (R=[A*G*k purines +T*C*k pyrimidines ]/[(A+G)*(T+C)]).
    Mega4 Program, supplied by Biodesign International Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/mega4 program/product/Biodesign International Inc
    Average 90 stars, based on 1 article reviews
    mega4 program - by Bioz Stars, 2026-04
    90/100 stars

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    1) Product Images from "Identification of a group of Mus dunni endogenous virus-like endogenous retroviruses from the C57BL/6J mouse genome: proviral genomes, strain distribution, expression characteristics, and genomic integration profile"

    Article Title: Identification of a group of Mus dunni endogenous virus-like endogenous retroviruses from the C57BL/6J mouse genome: proviral genomes, strain distribution, expression characteristics, and genomic integration profile

    Journal: Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology

    doi: 10.1007/s10577-012-9322-z

    Patterns of nucleotide substitution: MDL-ERVs in cluster-B versus 157 MDL-ERVs of ~8–9 Kb in size Transition and transversion rates in the MDL-ERV proviral sequences were measured using MEGA4. Numbers in bold indicate transitional substitutions. Ts (transition), Tv (transversion), k (transition/transversion rate ratio). R represents overall transition/transversion bias, with A representing the number of adenosines, G the number of guanosines, T the number of thymidines, and C the number of cytidines. (R=[A*G*k purines +T*C*k pyrimidines ]/[(A+G)*(T+C)]).
    Figure Legend Snippet: Patterns of nucleotide substitution: MDL-ERVs in cluster-B versus 157 MDL-ERVs of ~8–9 Kb in size Transition and transversion rates in the MDL-ERV proviral sequences were measured using MEGA4. Numbers in bold indicate transitional substitutions. Ts (transition), Tv (transversion), k (transition/transversion rate ratio). R represents overall transition/transversion bias, with A representing the number of adenosines, G the number of guanosines, T the number of thymidines, and C the number of cytidines. (R=[A*G*k purines +T*C*k pyrimidines ]/[(A+G)*(T+C)]).

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    Patterns of nucleotide substitution: MDL-ERVs in cluster-B versus 157 MDL-ERVs of ~8–9 Kb in size Transition and transversion rates in the MDL-ERV proviral sequences were measured using MEGA4. Numbers in bold indicate transitional substitutions. Ts (transition), Tv (transversion), k (transition/transversion rate ratio). R represents overall transition/transversion bias, with A representing the number of adenosines, G the number of guanosines, T the number of thymidines, and C the number of cytidines. (R=[A*G*k purines +T*C*k pyrimidines ]/[(A+G)*(T+C)]).

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    Article Title: Identification of a group of Mus dunni endogenous virus-like endogenous retroviruses from the C57BL/6J mouse genome: proviral genomes, strain distribution, expression characteristics, and genomic integration profile

    doi: 10.1007/s10577-012-9322-z

    Figure Lengend Snippet: Patterns of nucleotide substitution: MDL-ERVs in cluster-B versus 157 MDL-ERVs of ~8–9 Kb in size Transition and transversion rates in the MDL-ERV proviral sequences were measured using MEGA4. Numbers in bold indicate transitional substitutions. Ts (transition), Tv (transversion), k (transition/transversion rate ratio). R represents overall transition/transversion bias, with A representing the number of adenosines, G the number of guanosines, T the number of thymidines, and C the number of cytidines. (R=[A*G*k purines +T*C*k pyrimidines ]/[(A+G)*(T+C)]).

    Article Snippet: Sequence diversity of two different MDL-ERV populations (cloned from the genomic DNAs of the C57BL/6J and Mus caroli/EiJ mice) was analyzed using the MEGA4 (Build 4028) program (The Biodesign Institute, Tempe, AZ) ( Tamura et al. 2007 ).

    Techniques: